Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins.
Identifieur interne : 000207 ( 2020/Analysis ); précédent : 000206; suivant : 000208Structural Genomics of SARS-CoV-2 Indicates Evolutionary Conserved Functional Regions of Viral Proteins.
Auteurs : Suhas Srinivasan [États-Unis] ; Hongzhu Cui [États-Unis] ; Ziyang Gao [États-Unis] ; Ming Liu [États-Unis] ; Senbao Lu [États-Unis] ; Winnie Mkandawire [États-Unis] ; Oleksandr Narykov [États-Unis] ; Mo Sun [États-Unis] ; Dmitry Korkin [États-Unis]Source :
- Viruses [ 1999-4915 ] ; 2020.
Descripteurs français
- KwdFr :
- Alignement de séquences, Animaux, Biologie informatique, Cartographie d'interactions entre protéines, Chiroptera (virologie), Glycoprotéine de spicule des coronavirus (), Génome viral, Génomique, Humains, Infections à coronavirus, Ligands, Modèles moléculaires, Pandémies, Phylogénie, Pneumopathie virale, Protéines de l'enveloppe virale (), Protéines de la matrice virale (), Protéines nucléocapside (), Protéines virales (génétique), Sites de fixation, Structure tertiaire des protéines, Séquence conservée, Virus du SRAS, Évolution biologique.
- MESH :
- génétique : Protéines virales.
- virologie : Chiroptera.
- Alignement de séquences, Animaux, Biologie informatique, Cartographie d'interactions entre protéines, Glycoprotéine de spicule des coronavirus, Génome viral, Génomique, Humains, Infections à coronavirus, Ligands, Modèles moléculaires, Pandémies, Phylogénie, Pneumopathie virale, Protéines de l'enveloppe virale, Protéines de la matrice virale, Protéines nucléocapside, Sites de fixation, Structure tertiaire des protéines, Séquence conservée, Virus du SRAS, Évolution biologique.
English descriptors
- KwdEn :
- Animals, Betacoronavirus (chemistry), Betacoronavirus (genetics), Binding Sites, Biological Evolution, Chiroptera (virology), Computational Biology, Conserved Sequence, Coronavirus Infections, Genome, Viral, Genomics, Humans, Ligands, Models, Molecular, Nucleocapsid Proteins (chemistry), Pandemics, Phylogeny, Pneumonia, Viral, Protein Interaction Mapping, Protein Structure, Tertiary, SARS Virus, Sequence Alignment, Spike Glycoprotein, Coronavirus (chemistry), Viral Envelope Proteins (chemistry), Viral Matrix Proteins (chemistry), Viral Proteins (genetics).
- MESH :
- chemical , chemistry : Nucleocapsid Proteins, Spike Glycoprotein, Coronavirus, Viral Envelope Proteins, Viral Matrix Proteins.
- chemical , genetics : Viral Proteins.
- chemical : Ligands.
- chemistry : Betacoronavirus.
- genetics : Betacoronavirus.
- virology : Chiroptera.
- Animals, Binding Sites, Biological Evolution, Computational Biology, Conserved Sequence, Coronavirus Infections, Genome, Viral, Genomics, Humans, Models, Molecular, Pandemics, Phylogeny, Pneumonia, Viral, Protein Interaction Mapping, Protein Structure, Tertiary, SARS Virus, Sequence Alignment.
Abstract
During its first two and a half months, the recently emerged 2019 novel coronavirus, SARS-CoV-2, has already infected over one-hundred thousand people worldwide and has taken more than four thousand lives. However, the swiftly spreading virus also caused an unprecedentedly rapid response from the research community facing the unknown health challenge of potentially enormous proportions. Unfortunately, the experimental research to understand the molecular mechanisms behind the viral infection and to design a vaccine or antivirals is costly and takes months to develop. To expedite the advancement of our knowledge, we leveraged data about the related coronaviruses that is readily available in public databases and integrated these data into a single computational pipeline. As a result, we provide comprehensive structural genomics and interactomics roadmaps of SARS-CoV-2 and use this information to infer the possible functional differences and similarities with the related SARS coronavirus. All data are made publicly available to the research community.
DOI: 10.3390/v12040360
PubMed: 32218151
Affiliations:
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pubmed:32218151Le document en format XML
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sort="Korkin, Dmitry" uniqKey="Korkin D" first="Dmitry" last="Korkin">Dmitry Korkin</name><affiliation wicri:level="2"><nlm:affiliation>Data Science Program, Worcester Polytechnic Institute, Worcester, MA 01609, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Data Science Program, Worcester Polytechnic Institute, Worcester, MA 01609</wicri:regionArea><placeName><region type="state">Massachusetts</region></placeName></affiliation></author></analytic><series><title level="j">Viruses</title><idno type="eISSN">1999-4915</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Betacoronavirus (chemistry)</term><term>Betacoronavirus (genetics)</term><term>Binding Sites</term><term>Biological Evolution</term><term>Chiroptera (virology)</term><term>Computational Biology</term><term>Conserved Sequence</term><term>Coronavirus Infections</term><term>Genome, Viral</term><term>Genomics</term><term>Humans</term><term>Ligands</term><term>Models, Molecular</term><term>Nucleocapsid Proteins (chemistry)</term><term>Pandemics</term><term>Phylogeny</term><term>Pneumonia, Viral</term><term>Protein Interaction Mapping</term><term>Protein Structure, Tertiary</term><term>SARS Virus</term><term>Sequence Alignment</term><term>Spike Glycoprotein, Coronavirus (chemistry)</term><term>Viral Envelope Proteins (chemistry)</term><term>Viral Matrix Proteins (chemistry)</term><term>Viral Proteins (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Alignement de séquences</term><term>Animaux</term><term>Biologie informatique</term><term>Cartographie d'interactions entre protéines</term><term>Chiroptera (virologie)</term><term>Glycoprotéine de spicule des coronavirus ()</term><term>Génome viral</term><term>Génomique</term><term>Humains</term><term>Infections à coronavirus</term><term>Ligands</term><term>Modèles moléculaires</term><term>Pandémies</term><term>Phylogénie</term><term>Pneumopathie virale</term><term>Protéines de l'enveloppe virale ()</term><term>Protéines de la matrice virale ()</term><term>Protéines nucléocapside ()</term><term>Protéines virales (génétique)</term><term>Sites de fixation</term><term>Structure tertiaire des protéines</term><term>Séquence conservée</term><term>Virus du SRAS</term><term>Évolution biologique</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Nucleocapsid Proteins</term><term>Spike Glycoprotein, Coronavirus</term><term>Viral Envelope Proteins</term><term>Viral Matrix Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Viral Proteins</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Ligands</term></keywords><keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Betacoronavirus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Betacoronavirus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Protéines virales</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Binding Sites</term><term>Biological Evolution</term><term>Computational Biology</term><term>Conserved Sequence</term><term>Coronavirus Infections</term><term>Genome, Viral</term><term>Genomics</term><term>Humans</term><term>Models, Molecular</term><term>Pandemics</term><term>Phylogeny</term><term>Pneumonia, Viral</term><term>Protein Interaction Mapping</term><term>Protein Structure, Tertiary</term><term>SARS Virus</term><term>Sequence Alignment</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Alignement de séquences</term><term>Animaux</term><term>Biologie informatique</term><term>Cartographie d'interactions entre protéines</term><term>Glycoprotéine de spicule des coronavirus</term><term>Génome viral</term><term>Génomique</term><term>Humains</term><term>Infections à coronavirus</term><term>Ligands</term><term>Modèles moléculaires</term><term>Pandémies</term><term>Phylogénie</term><term>Pneumopathie virale</term><term>Protéines de l'enveloppe virale</term><term>Protéines de la matrice virale</term><term>Protéines nucléocapside</term><term>Sites de fixation</term><term>Structure tertiaire des protéines</term><term>Séquence conservée</term><term>Virus du SRAS</term><term>Évolution biologique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">During its first two and a half months, the recently emerged 2019 novel coronavirus, SARS-CoV-2, has already infected over one-hundred thousand people worldwide and has taken more than four thousand lives. However, the swiftly spreading virus also caused an unprecedentedly rapid response from the research community facing the unknown health challenge of potentially enormous proportions. Unfortunately, the experimental research to understand the molecular mechanisms behind the viral infection and to design a vaccine or antivirals is costly and takes months to develop. To expedite the advancement of our knowledge, we leveraged data about the related coronaviruses that is readily available in public databases and integrated these data into a single computational pipeline. As a result, we provide comprehensive structural genomics and interactomics roadmaps of SARS-CoV-2 and use this information to infer the possible functional differences and similarities with the related SARS coronavirus. All data are made publicly available to the research community.</div></front></TEI><affiliations><list><country><li>États-Unis</li></country><region><li>Massachusetts</li></region></list><tree><country name="États-Unis"><region name="Massachusetts"><name sortKey="Srinivasan, Suhas" sort="Srinivasan, Suhas" uniqKey="Srinivasan S" first="Suhas" last="Srinivasan">Suhas Srinivasan</name></region><name sortKey="Cui, Hongzhu" sort="Cui, Hongzhu" uniqKey="Cui H" first="Hongzhu" last="Cui">Hongzhu Cui</name><name sortKey="Gao, Ziyang" sort="Gao, Ziyang" uniqKey="Gao Z" first="Ziyang" last="Gao">Ziyang Gao</name><name sortKey="Korkin, Dmitry" sort="Korkin, Dmitry" uniqKey="Korkin D" first="Dmitry" last="Korkin">Dmitry Korkin</name><name sortKey="Liu, Ming" sort="Liu, Ming" uniqKey="Liu M" first="Ming" last="Liu">Ming Liu</name><name sortKey="Lu, Senbao" sort="Lu, Senbao" uniqKey="Lu S" first="Senbao" last="Lu">Senbao Lu</name><name sortKey="Mkandawire, Winnie" sort="Mkandawire, Winnie" uniqKey="Mkandawire W" first="Winnie" last="Mkandawire">Winnie Mkandawire</name><name sortKey="Narykov, Oleksandr" sort="Narykov, Oleksandr" uniqKey="Narykov O" first="Oleksandr" last="Narykov">Oleksandr Narykov</name><name sortKey="Sun, Mo" sort="Sun, Mo" uniqKey="Sun M" first="Mo" last="Sun">Mo Sun</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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